论文
| • Zhao H, Xu Y, Xue B, Zhao S, Zhang M, Wu XK, Wang T, Wen Y, Li S, Zhang Q, Yang Z, Sun H, Pan T, Lian Y, Gao X, Gao C, Wang Z, Wu C, Zhang C, Jian X, Peng L, Zhang X, Wang B, Wei L, He Y, Xia D, Wu Z, Yang Q, Sun Y, Ding Y, Du S, Xia G, Jing Y, Xu H, Shi W, Liu J, He L, Chen ZJ, Cao Y, Li Z, Shi Y *. (2025) Multi-ancestry genome-wide association analyses of polycystic ovary syndrome. Nature Genetics. 57: 2669-2681. doi: 10.1038/s41588-025-02393-x. |
| • Xu H, Liu F, Li Z, Li X, Liu Y, Li N, Zhang X, Gao Z, Zhang X, Liu Y, Zou J, Meng L, Liu S, Zhu H, Tang X, Wu H, Su K, Chen B, Yu D, Ye H, Chen H, Yi H, Guan J*, Yin S*, Shi Y *. (2022) Genome-Wide Association Study of Obstructive Sleep Apnea and Objective Sleep-Related Traits Identifies Novel Risk Loci in Han Chinese Individuals. Am J Respir Crit Care Med. 12: doi: 10.1164/rccm.202109-2044OC. |
| • Lam M, Chen CY, Li Z, Martin AR, Bryois J, Ma X, Gaspar H, Ikeda M, Benyamin B, Brown BC, Liu R, Zhou W, Guan L, Kamatani Y, Kim SW, Kubo M, Kusumawardhani AAAA, Liu CM, Ma H, Periyasamy S, Takahashi A, Xu Z, Yu H, Zhu F; Schizophrenia Working Group of the Psychiatric Genomics Consortium; Indonesia Schizophrenia Consortium; Genetic REsearch on schizophreniA neTwork-China and the Netherlands (GREAT-CN), Chen WJ, Faraone S, Glatt SJ, He L, Hyman SE, Hwu HG, McCarroll SA, Neale BM, Sklar P, Wildenauer DB, Yu X, Zhang D, Mowry BJ, Lee J, Holmans P, Xu S, Sullivan PF, Ripke S, O'Donovan MC, Daly MJ, Qin S, Sham P, Iwata N, Hong KS, Schwab SG, Yue W*, Tsuang M*, Liu J*, Ma X*, Kahn RS*, Shi Y *, Huang H*. (2019) Comparative genetic architectures of schizophrenia in East Asian and European populations. Nature Genetics. 51: 1670-1678. |
| • Li Z, Chen J, Yu H, He L, Xu Y, Zhang D, Yi Q, Li C, Li X, Shen J, Song Z, Ji W, Wang M, Zhou J, Chen B, Liu Y, Wang J, Wang P, Yang P, Wang Q, Feng G, Liu B, Sun W, Li B, He G, Li W, Wan C, Xu Q, Li W, Wen Z, Liu K, Huang F, Ji J, Ripke S, Yue W, Sullivan P, Donovan M, Shi Y *. (2017) Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia. Nature Genetics. 49: 1576-1583. |
| • Chen P, Pan D, Fan C*, Chen J, Huang K, Wang D, Zhang H, Li Y, Feng G, Liang P, He L, Shi Y *. (2011) Gold nanoparticles for high-throughput genotyping of long-range haplotypes. Nature Nanotechnology. 6: 639-44. doi: 10.1038/nnano.2011.141. |
| • Shi Y *, Li Z, Xu Q, Wang T, Li T, Shen J, Zhang F, Chen J, Zhou G, Ji W, Li B, Xu Y, Liu D, Wang P, Yang P, Liu B, Sun W, Wan C, Qin S, He G, Steinberg S, Cichon S, Werge T, Sigurdsson E, Tosato S, Palotie A, Nöthen MM, Rietschel M, Ophoff RA, Collier DA, Rujescu D, Clair DS, Stefansson H, Stefansson K, Ji J, Wang Q, Li W, Zheng L, Zhang H, Feng G, He L*. (2011) Common variants on 8p12 and 1q24.2 confer risk of schizophrenia. Nature Genetics. 43: 1224-7. doi: 10.1038/ng.980. |
| • Shi Y *, Hu Z, Wu C, Dai J, Li H, Dong J, Wang M, Miao X, Zhou Y, Lu F, Zhang H, Hu L, Jiang Y, Li Z, Chu M, Ma H, Chen J, Jin G, Tan W, Wu T, Zhang Z, Lin D*, Shen H*. (2011) A genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1. Nature Genetics. 43: 1215-8. doi: 10.1038/ng.978. |
| • Shi Y *, Li L, Hu Z, Li S, Wang S, Liu J, Wu C, He L, Zhou J, Li Z, Hu T, Chen Y, Jia Y, Wang S, Wu L, Cheng X, Yang Z, Yang R, Li X, Huang K, Zhang Q, Zhou H, Tang F, Chen Z, Shen J, Jiang J, Ding H, Xing H, Zhang S, Qu P, Song X, Lin Z, Deng D, Xi L, Lv W, Han X, Tao G, Yan L, Han Z, Li Z, Miao X, Pan S, Shen Y, Wang H, Liu D, Gong E, Li Z, Zhou L, Luan X, Wang C, Song Q, Wu S, Xu H, Shen J, Qiang F, Ma G, Liu L, Chen X, Liu J, Wu J, Shen Y, Wen Y, Chu M, Yu J, Hu X, Fan Y, He H, Jiang Y, Lei Z, Liu C, Chen J, Zhang Y, Yi C, Chen S, Li W, Wang D, Wang Z, Di W, Shen K, Lin D, Shen H, Feng Y, Xie X*, Ma D*. (2013) A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12. Nature Genetics. 45: 918-22. doi: 10.1038/ng.2687. Epub 2013 Jun 30. |
| • Li Z, Zhang Z, He Z, Tang W, Li T, Zeng Z, He L*, Shi Y *. (2009) A partition-ligation-combination-subdivision EM algorithm for haplotype inference with multiallelic markers: update of the SHEsis (http://analysis.bio-x.cn). Cell Research. 19: 519-23. |
| • Shi YY , He L*. (2005) SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci. Cell Research. 15: 97-8. |
| • Shi Y , Zhao H, Shi Y, Cao Y, Yang D, Li Z, Zhang B, Liang X, Li T, Chen J, Shen J, Zhao J, You L, Gao X, Zhu D, Zhao X, Yan Y, Qin Y, Li W, Yan J, Wang Q, Zhao J, Geng L, Ma J, Zhao Y, He G, Zhang A, Zou S, Yang A, Liu J, Li W, Li B, Wan C, Qin Y, Shi J, Yang J, Jiang H, Xu JE, Qi X, Sun Y, Zhang Y, Hao C, Ju X, Zhao D, Ren CE, Li X, Zhang W, Zhang Y, Zhang J, Wu D, Zhang C, He L*, Chen ZJ*. (2012) Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome. Nature Genetics. 44: 1020-5. |
| • Hu X, Liu Q, Zhang Z, Li Z, Wang S, He L*, Shi Y *. (2010) SHEsisEpi, a GPU-enhanced genome-wide SNP-SNP interaction scanning algorithm, efficiently reveals the risk genetic epistasis in bipolar disorder. Cell Research. 20: 854-7. |
| • Ye Z, Li Z, Wang Y, Mao Y, Shen M, Zhang Q, Li S, Zhou L, Shou X, Chen J, Song Z, Ma Z, Zhang Z, Li Y, Ye H, Huang C, Wang T, He W, Zhang Y, Xie R, Qiao N, Qiu H, Huang S, Wang M, Shen J, Wen Z, Li W, Liu K, Zhou J, Wang L, Ji J, Wang Y, Chen H, Cheng H, Shi Z, Zhu Y, Geng D, Yao Z, Tang W, Lu B, Pan L, Zhang Y, Bao W, Wu J, Zheng K, Shi Y *, Zhao Y*. (2015) Common variants at 10p12.31, 10q21.1 and 13q12.13 are associated with sporadic pituitary adenoma. Nature Genetics. 47: 793-7. doi: 10.1038/ng.3322. |
| • Hu Z*, Liu Y, Zhai X, Dai J, Jin G, Wang L, Zhu L, Yang Y, Liu J, Chu M, Wen J, Xie K, Du G, Wang Q, Zhou Y, Cao M, Liu L, He Y, Wang Y, Zhou G, Jia W, Lu J, Li S, Liu J, Yang H, Shi Y *, Zhou W*, Shen H*. (2013) New loci associated with chronic hepatitis B virus infection in Han Chinese. Nature Genetics. 45: 1499-503. doi: 10.1038/ng.2809. |
| • Chen ZJ*, Zhao H, He L, Shi Y, Qin Y, Shi Y *, Li Z, You L, Zhao J, Liu J, Liang X, Zhao X, Zhao J, Sun Y, Zhang B, Jiang H, Zhao D, Bian Y, Gao X, Geng L, Li Y, Zhu D, Sun X, Xu JE, Hao C, Ren CE, Zhang Y, Chen S, Zhang W, Yang A, Yan J, Li Y, Ma J, Zhao Y. (2011) Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3. Nature Genetics. 43: 55-9. |
