论文
| • Shang, C#, Wang, Y#, Zhao, M#, Fan Q, Zhao S, Qian Y, Mu, Y.* (2024) Real-time analysis of large-scale neuronal imaging enables closed-loop investigation of neural dynamics. Nat Neurosci : 1-5. |
| • Chai, Y., Qi, K., Wu, Y., Li, D., Tan, G., Guo, Y., Chu, J.,Mu, Y.*, Shen, C., Wen, Q. (2024) All-optical interrogation of brain-wide activity in freely swimming larval zebrafish. iScience : 27(1). |
| • Wang, K., Chen T., Zhang X., Cao, J., Zhao W., Du, J.*, Mu, Y.*, Tao, R.*, (2024) Unveiling Tryptophan Dynamics and Functions Across Model Organisms via Quantitative ImagingK bioRxiv. : 12.580012 |
| • Gu, W., Chen, JH., Zhang Y., Wang Z., Li, J., Wang S., Zhang H., Jiang A., Zhong Z., Zhang, J., Xi, C., Hou, T., Gill, D., Li, D., Mu, Y.*, , Wang, S.*, Tang, A. *, Wang, Y. *, (2024) Highly Dynamic and Sensitive NEMOer Calcium Indicators for Imaging ER Calcium Signals in Excitable Cells. bioRxiv. : .08.583332 |
| • Zhao, J., Xue, L., Mu, Y., P Ji, P.* (2024) From animal biology to simulated models and back. Physics of life reviews 49: 17-18 |
| • Deng,P., Liu, X., Zhao, Y., Zhang, X., Kong, Y., Liu, L., Xiao, Y., Yang, S., Hu, J., Su, J., Xuan, A., Xu, J., Li, H., Su, X.,Wu, J., Jiang, Y.,Mu, Y.*, Shao, Z., Kong, C., Li, B. (2024) Long-working-distance high-collection-efficiency three-photon microscopy for in vivo long-term imaging of zebrafish and organoids. iScience 27（8）: 110554. |
| • Tao, R., Wang, K., Chen, Tl., Zhang, X., Cao, J., Zhao, W., Du, J.,Mu, Y. (2023) A genetically encoded ratiometric indicator for tryptophan. Cell Discov. 9: 106 |
| • Li, D.,Mu, Y.* (2024) Neuromodulatory system in network science. Physics of Life Reviews 46: 155-157 |
| • Ji, P., Ye, J.,Mu, Y., Lin, W., Tian, Y., Hens, C., Perc, M., Tang, Y., Sun, J., Kurths, J. (2023) Signal propagation in complex networks. Physics Reports. 1017: 1-96 |
| • Nanda, A., Johnson, G.,Mu, Y., Ahrens, M., Chang, C., Englot, D., Breakspear, M., Rubinov, M.. (2023) Time-resolved correlation of distributed brain activity tracks EI balance and accounts for diverse scale-free phenomena. Cell Rep. 41: 112254 |
| • Jiao, Z., Zhou, Z., Chen, Z., Xie, J.,Mu, Y. , Du, J., Fu, L. (2023) Simultaneous multi-plane imaging light-sheet fluorescence microscopy for simultaneously acquiring neuronal activity at varying depths. Optica. 10: 239-247. |
| • Koh, T., Bishop, W., Kawashima, T., Jeon, B., Srinivasan, R.,Mu, Y., Wei, Z., Kuhlman, S., Ahrens, M., Chase, S., Yu, B. (2023) Dimensionality reduction of calcium-imaged neuronal population activity. Nat. Comp. Sci. 3: 71-85. |
| • Wang, S., Wang, Z., Mu, Y. * (2022) Locus Coeruleus in Non-Mammalian Vertebrates. Brain Sci. 12: 124 |
| • Ye, H., Xu, X., Wang, J., Wang, J., He, Y.,Mu, Y., Shi, G. (2022) Polarization effects on the fluorescence emission of zebrafish neurons using light-sheet microscopy. Biomed. Opt. Express 12: 6733-6744. |
| • Zhao, S., Qian, Y., Mu, Y. * (2021) Tracking single cells in zebrafish brain. J. Neurosci. Meth. 353: 109086 |
| • Mu, Y.*#, Narayan, S., Mensh, B., Ahrens, M.* (2020) Brain-wide, scale-wide physiology underlying behavioral flexibility in zebrafish. Curr. Opin. Neurobiol. 64: 151-160. |
| • Mu, Y.*#, Bennett, D. V. #, Rubinov, M. #, Narayan, S., Yang, C., Tanimoto, M., Mensh, B., Looger, L.L., and Ahrens, M.* (2019) Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior. Cell 178: 27-43 |
| • Fleishman, G.M., Zhang, M., Tustison, N.J., Espinosa-Medina, I., Mu, Y., Khairy, K., and Ahrens, M. (2019) Deformable Registration of Whole Brain Zebrafish Microscopy Using an Implementation of the Flash Algorithm Within Ants. In 2019 IEEE 16th International Symposium on Biomedical Imaging : 213-217 |
| • Chen, X. #, Mu, Y. #, Hu, Y. #, Kuan, A. #, Nikitchenko, M., Randlett, O., Chen, A.B., Gavornik, J., Sompolinsky, H., Engert, F., and Ahrens, M. (2018) Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish. Neuron 100: 876-890 |
| • Vladimirov, N., Wang, C., Hckendorf, B., Pujala, A., Tanimoto, M., Mu, Y., Yang, C., Wittenbach, J., Freeman, J., Preibisch, S., Koyama, M., Keller, P., Ahrens, M. (2018) Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function Nat. Methods 15: 1117-1125 |
| • Friedrich, J., Yang, W., Soudry, D., Mu, Y., Ahrens, M.B., Yuste, R., Peterka, D.S., and Paninski, L. (2017) Multi-scale approaches for high-speed imaging and analysis of large neural populations. PLoS Comput. Biol. 13: e1005685 |
| • Dunn, T.#, Mu, Y. #, Narayan, S., Randlett, O., Naumann, E., Yang, C.T., Schier, A., Freeman, J., Engert, F., and Ahrens, M. (2016) Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion. eLife 5: e12741 |
| • Pnevmatikakis, E., Soudry, D., Gao, Y., Machado, T.A., Merel, J., Pfau, D., Reardon, T., Mu, Y., Lacefield, C., Yang, W., Ahrens, M., Bruno, R., Jessell, T., Peterka, D., Yuste, R., Paninski, L. (2016) Simultaneous denoising, deconvolution, and demixing of calcium imaging data Neuron 89: 285–299 |
| • Friedrich, J., Soudry, D., Mu, Y., Freeman, J., Ahrens, M., and Paninski, L. (2015) Fast Constrained Non-negative Matrix Factorization for Whole-Brain Calcium Imaging Data. NIPS workshop on statistical methods for understanding neural systems : 1–5 |
| • Shang, C., Mu, Y., and Du, J. (2015) Zebrafish Swimming into Neuroscience Research: A Visible Mind in A Transparent Brain. 中国科学 45: 223-236 |
| • Vladimirov, N., Mu, Y., Kawashima, T., Bennett, D. V, Yang, C., Looger, L., Keller, P., Freeman, J., and Ahrens, M. (2014) Light-sheet functional imaging in fictively behaving zebrafish. Nat. Methods 11: 883-884 |
| • Freeman, J., Vladimirov, N., Kawashima, T., Mu, Y., Sofroniew, N., Bennett, D., Rosen, J., Yang, C., Looger, L., and Ahrens, M. (2014) Mapping brain activity at scale with cluster computing. Nat. Methods 11: 941–950 |
| • Shang, C., Mu, Y., and Du, J. (2014) Progress in the application of zebrafish in neuroscience research. 新生物学年鉴 3: 141-170 |
| • Mu, Y.*, Li, X. (2012) 用心看, 用眼听, 目遇之而为声 生命科学 24: 1380-1383 |
| • Mu, Y. #, Li, X. #, Zhang, B., and Du, J. (2012) Visual Input Modulates Audiomotor Function via Hypothalamic Dopaminergic Neurons through a Cooperative Mechanism. Neuron 75: 688-699 |
| • Han, Y., Mu, Y., Li, X., Xu, P., Tong, J., Liu, Z., Ma, T., Zeng, G., Yang, S., Du, J., Meng, A. (2011) Grhl2 deficiency impairs otic development and hearing ability in a zebrafish model of the progressive dominant hearing loss DFNA28. Hum. Mol. Genet. 20: 3213–3226 |
| • Feng, Y., Yan, T., Zheng, J., Ge, X., Mu, Y., Zhang, Y., Wu, D., Du, J., and Zhai, Q. (2010) Overexpression of Wlds or Nmnat2 in mauthner cells by single‐cell electroporation delays axon degeneration in live zebrafish J. Neurosci. Res. 88: 3319-3327 |
| • Liu, C., Mu, Y., and Du, J. (2007) 斑马鱼在生命科学研究中的应用 生命科学 19: 382–386 |
